- Rios, E., Alvarez Castañeda, S. T. 2012. Pelage color variation in pocket gophers rodentia geomyidae in relation to sex age and differences in habitat. Mammalian biology. 77:160-165.
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- Alvarez Castañeda, S. T., Cortes Calva, P. 2012. DNA barcoding of mammals in Mexico implications for biodiversity. Open Zoology. 5:18-26.
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- Cortes Calva, P., Alvarez Castañeda, S. T., De La Paz Cuevas, M. 2012. Underwoods Bonneted bat Eumops underwoodi First record in the Baja California Peninsula. Western North American Naturalist.3(72):412-415.
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- Alvarez Castañeda, S. T., Cortes Calva, P., De La Paz Cuevas, M. 2012. Análisis de los mamíferos de México en las colecciones científicas de Norteamérica. Therya. 2(3)
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- Álvarez Castañeda S.T. y E. Rios. 2011. Revision of Chaetodipus arenarius. The Zoological Journal of the Linnean Society 161:213-228.
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- Lorenzo C., Álvarez Castañeda S.T. and Vázquez J. 2011. Conservation status of the threatened insular San Jose brush rabbit (Sylvilagus mansuetus). Western North American Naturalist 71:10-16.
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- Vázquez J. y Álvarez Castañeda S.T. 2011. Spatial relationships between burrows of an insular population of Dipodomys merriami Mammalian Biology. Mammalian Biology 76:577-582.
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- Álvarez Castañeda S.T. and Cortés-Calva P. 2011. Taxonomic and genetic evaluation of the endemic ground squirrel Otospermophilus atricapillus (Rodentia: Sciuridae). Zootaxa 3138:35-51
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- Álvarez-Castañeda S.T., G.Arnaud, P. Cortés-Calva and L. Méndez. 2010. Invasive migration of a mainland rodent to Santa Catalina Island and its effect on the endemic species Peromyscus slevini. Biological Invasions 12:437-439
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- Álvarez-Castañeda S.T. 2010. Phylogenetic structure of the Thomomys bottae-umbrinus complex in North America. Molecular Phylogenetics and Evolution 54:671-679.
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- Rios, E. y S.T. Álvarez-Castañeda. 2010. Phylogeography and systematics of San Diego pocket mouse (Chaetodipus fallax). Journal of Mammalogy 91:293-301
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- Lorenzo C., S.T. Álvarez-Castañeda, P. Cortés-Calva, M. de la Paz, and J. E. Bolaños. 2010. Invasion migration of a mainland jackrabbit to Cerralvo island. Gulf of California, and its current situation. Western North American Naturalist 70:249-251
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- Álvarez Castañeda S.T. and Rios E. 2010. Revision of Chaetodipus arenarius. Zoological Journal of the Linnean Society 160:1-16
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- Álvarez-Castañeda S.T., P. Cortés-Calva, F.X. González-Cózatl, D. Rojas and I. Leyva. 2010. Assessment of distribution and habitat characteristics of cryptic species of Peromyscus: a RFLP´s accurate identification achievement. Western North American Naturalist 70:323-333.
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- Álvarez-Castañeda S.T. and E. Rios. 2010. A phylogenetic analysis of Neotoma varia (Rodentia: Cricetidae), a rediscovered, endemic, and threatened rodent from Datil Island, Sonora, Mexico. Zootaxa 2647:51-60
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- Álvarez-Castañeda S.T., A. Gutierrez, y M. de la Paz. 2010. Rediscovery of the Neotoma population from Datil Island, Sonora, Mexico. Western North American Naturalist 70:437-440
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- Álvarez-Castañeda S.T. and N. González-Ruíz. 2009. Peromyscus levipes. Mammalian species 824:1-6.
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- Suárez-Gracida, C.G. and S.T. Álvarez-Castañeda. 2009. Physical and biological factors related to habitat preferences of rodents. Biodiversity and Conservation 18:2779-2797
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- Álvarez-Castañeda S.T., W.Z. Lidicker, Jr., y E. Rios. 2009. Revision of the Dipodomys merriami complex in the Baja California Peninsula, Mexico. Journal of Mammalogy 90:992-1008
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- Méndez Rodriguez L., S.C. Gardner, L. Brito-Castillo, B. Acosta, J. Wurlz and S.T. Alvarez-Castañeda. 2008. Distinguishing the hydrochemistry of two hydrological basins in northern Mexico using factor analysis. Water Quality Research Journal of Canada. 43:1-9.
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