- Arredondo-Espinoza R.C., Ibarra A.M., Roberts B. S., Sicard-Gonzalez M.T., Escobedo-Fregoso C. 2021. Differentially methylated gene regions between resistant and susceptible heat-phenotypes of the Pacific oyster Crassostrea gigas. AQUACULTURE 543, 1-8. ISSN: 0044-8486. Netherlands. https://doi.org/10.1016/j.aquaculture.2021.736923
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- Juárez O.E., Escobedo-Fregoso C., Arredondo-Espinoza R.C., Ibarra A.M. 2021. Development of SNP markers for identification of thermo-resistant families of the Pacific oyster Crassostrea gigas based on RNA-seq. AQUACULTURE 539, 1-10. ISSN: 0044-8486. Netherlands. https://doi.org/10.1016/j.aquaculture.2021.736618
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- Hernandez-Ibarra K., Ramirez J.L., Ibarra A.M. 2020. The karyotype of the Pacific lion-paw scallop Nodipecten subnodosus (Sowerby, 1835). J. OF SHELLFISH RESEARCH 39(2), 353-358 ISSN: 0730-8000. USA. https://doi.org/10.2983/035.039.0217
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- Galindo-Torres P., Ventura-Lopez C., Llera-Herrera R., Ibarra A.M. 2019. A natural antisense transcript of the fem-1 gene was found expressed in female gonads during the characterization, expression profile, and cellular localization of the fem-1 gene in Pacific white shrimp Penaeus vannamei (Boone, 1931). GENE 706, 19-31. ISSN: 0378-1119. Netherlands. https://doi.org/10.1016/j.gene.2019.04.066
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- Hernandez-Ibarra N.K., Morelos R.M., Ramirez J.L., Cruz P., Leitch A.R., Ibarra A.M. 2019. Chromosomal and molecular characterization of 5S rDNA genes in the North American abalones Haliotis rufescens Swainson (red abalone) and H. fulgens Philippi (blue abalone). GENE 695, 65-74. ISSN: 0378-1119. Netherlands. https://doi: 10.1016/j.gene.2019.02.003
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- Lopez-Cuadros I., Garcia-Gasca A., Gómez-Anduro G., Escobedo-Fregoso R., Llera-Herrera R.A., Ibarra A.M. 2018. Isolation of the sex-determining gene Sex-lethal (Sxl) in Penaeus (Litopenaeus) vannamei (Boone, 1931) and characterization of its embryogenic, gametogenic, and tissue-specific expression. GENE 668, 33-47. ISSN: 0378-1119. Netherlands. https://doi.org/10.1016/j.gene.2018.05.024
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- Galindo-Torres P.E., García-Gasca A., Llera-Herrera R., Escobedo-Fregoso C., Abreu-Goodger C., Ibarra A.M. 2018. Sex determination and differentiation genes in a functional hermaphrodite scallop, Nodipecten subnodosus. MARINE GENOMICS 37, 161-175. ISSN: 1874-7787. Netherlands. https://doi.org/10.1016/j.margen.2017.11.004
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- Bayne B. L., M. Ahrens, S. K. Allen, M. Anglès D'auriac, T. Backeljau, P. Beninger, R. Bohn, P. Boudry, J. Davis, T. Green, X. Guo, D. Hedgecock, A. Ibarra, P. Kingsley-Smith, M. Krause, C. Langdon, S. Lapègue, C. Li, D. Manahan, R. Mann, L. Perez-Paralle, E. N. Powell, P. D. Rawson, D. Speiser, J.-L. Sanchez, S. Shumway, H. Wang. 2017. The Proposed Dropping of the Genus Crassostrea for All Pacific Cupped Oysters and Its Replacement by a New Genus Magallana: A Dissenting View. J. SHELLFISH RESEARCH 36 (3), 545-547. ISSN: 0730-8000. USA. DOI 10.2983/035.036.0301
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- Ibarra A.M., Ramirez J.L., Maldonado R. 2017. Effects of tetraploidy condition on gamete size and testis vs ovary allocation in the functional hermaphrodite scallop Argopecten ventricosus (Sowerby II, 1842). J. SHELLFISH RESEARCH 36 (3), 641-648. ISSN: 0730-8000. ISSN: 0730-8000. USA. https://doi.org/10.2983/035.036.0313
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- Ibarra A.M., Ascencio-Michel R., Ramirez J.L., Manzano-Sarabia M., Rodriguez-Jaramillo C. 2017. Performance of diploid and triploid Crassostrea gigas grown in tropical vs. temperate natural environmental conditions. J. SHELLFISH RESEARCH 36 (1), 119-139.
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- Ventura-López C., Galindo-Torres P.E., Arcos F.G., Galindo-Sanchez C., Racotta I.S., Escobedo-Fregoso C., Llera-Herrera R., Ibarra A.M. 2017. Transcriptomic information from Pacific White shrimp (Litopenaeus vannamei) ovary and eyestalk, and expression patterns for genes putatively involved in the reproductive process. GENERAL & COMPARATIVE ENDOCRINOLOGY 246, 164–182.
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- Ventura-López C., Gómez-Anduro G., Arcos F.G., Llera-Herrera R., Racotta I.S., Ibarra A.M. 2016. A novel CHH gene from the Pacific white shrimp Litopenaeus vannamei was characterized and found highly expressed in gut and less in eyestalk and other extra-eyestalk tissues. GENE 582, 148–160.
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- Morelos R.M., Ramírez J.L., García-Gasca A., Ibarra A.M. 2015. Expression of the myostatin gene in the adductor muscle of the Pacific lion-paw scallop Nodipecten subnodosus in association with growth and environmental conditions. J. EXP. ZOOL. 323A, 239-255.
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- Llera-Herrera R., Garcia-Gasca, A., Abreu-Goodger, C, Huvet A., Ibarra A.M. 2013. Identification of male gametogenesis expressed genes from the scallop Nodipecten subnodosus by suppressive subtraction hybridization and pyrosequencing. PLoS ONE 8(9): e73176.
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- Llera-Herrera R.A., Garcia-Gasca, S.A., Huvet A., Ibarra A.M. 2012. Identification of a tubulin-alpha gene specifically expressed in testis and adductor muscle during stable reference gene selection in the lion's paw scallop Nodipecten subnodosus. MARINE GENOMICS 6, 33-44.
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- Petersen, J.L., Baerwald, M.R., Ibarra, A.M., May, B. 2012. A first-generation linkage map of the Pacific lion-paw scallop: Initial evidence of QTL for size traits and markers linked to orange shell color. AQUACULTURE 350-353, 200–209.
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- Arcos, F.G., Ibarra, A.M., Racotta, I.S. 2011. Vitellogenin in hemolymph predicts gonad maturity in adult female Litopenaeus (Penaeus) vannamei shrimp. AQUACULTURE 316, 93–98.
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- Petersen, J.L., Ibarra, A.M., May, B. 2010. Nuclear and mtDNA lineage diversity in wild and cultured Pacific lion-paw scallop (Baja California Peninsula, Mexico). MARINE BIOLOGY 157, 2751-2767.
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- Hernández-Ibarra, N.K., Morelos, R.M., Cruz, P., Galindo-Sánchez, C.E., Avila, S., Ramírez, J.L., Ibarra, A.M. 2010. Allotriploid genotypic assignment in abalone larvae by detection of microsatellite-recombinant genotypes. J. OF HEREDITY 101, 476-490.
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- Petersen, J.L., Ibarra, A.M., May, B. 2009. Thirty-seven additional microsatellite loci in the Pacific lion-paw scallop (Nodipecten subnodosus) and cross-amplification in other Pectinids. CONSERVATION GENETICS RESOURCES 1: 101-105.
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- Ibarra, A.M., Famula, T.R., Arcos, F.G. 2009. Heritability of vitellogenin in hemolymph, a pre-spawning selectable trait in Penaeus (Litopenaeus) vannamei, has a large genetic correlation with ovary maturity measured as oocytes mean diameter. AQUACULTURE 297, 64-69.
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- Hernández-Ibarra, N.K., Leitch, A.R., Cruz, P., Ibarra, A.M. 2008. Fluorescent in situ hybridization and characterization of the SalI family of satellite repeats in the Haliotis L. species (abalone) of the Northeast Pacific. GENOME 51,570-579.
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- Ibarra, A.M., Famula, T.R. 2008. Genotype by environment interaction for adult body weights of shrimp Penaeus vannamei when grown at low versus high densities. GENETIC SELECTION EVOLUTION 40, 541-551.
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- Petersen J.L., Ibarra A.M.,Ramírez J.L., May B. 2008. An induced mass spawn of the hermaphroditic lion-paw scallop, Nodipecten subnodosus: Genetic assignment of maternal and paternal parentage. J. OF HEREDITY 99: 337-348.
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- Ibarra, A.M., Racotta, I.S., Arcos, F.G., Palacios,E. 2007. Progress on the genetics of reproductive performance in penaeid shrimp. AQUACULTURE 268:23-43.
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- Ibarra, A.M., Pérez-Rostro, C.I., Ramírez, J.L., Ortega-Estrada, E. 2007. Genetics of the resistance to hypoxia in postlarvae and juveniles of the Pacific white shrimp Penaeus (Litopenaeus) vannamei (Boone 1931). AQUACULTURE RESEARCH 38,838-846.
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- Ibarra, A.M., Petersen, J.L., Famula, T.R., May B. 2006. Characterization of 35 microsatellite loci in the Pacific lion-paw scallop (Nodipecten subnodosus) and their cross-species amplification in four other scallops of the Pectinidae family. MOLECULAR ECOLOGY NOTES 6, 153-156.
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- Arcos, F.G., Racotta, I.S., Palacios, E., Ibarra, A.M. 2005. Ovary development at the onset of gametogenesis is genetically determined and correlated with reproductive traits at maturity in shrimp Litopenaeus (Penaeus) vannamei. MARINE BIOLOGY 148, 339-346.
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- Cruz, P., Ibarra, A.M., Fiore-Amaral, G., Galindo-Sanchez, C.E., Mendoza-Carrion, G. 2005. Isolation of microsatellite loci in green abalone (Haliotis fulgens) and cross-species amplification in two other North American, red (H. rufescens) and pink (H. corrugate), abalones. MOLECULAR ECOLOGY NOTES 5, 853-855.
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- Ibarra, A.M., Arcos, F.G., Famula, T.R., Palacios, E., Racotta, I.S., 2005. Heritability of the categorical trait 'number of spawns' in Pacific white shrimp, Penaeus (Litopenaeus) vannamei. AQUACULTURE 250, 95 - 101.
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- Ibarra, A.M., Hernández-Ibarra, N.K., Cruz, P., Pérez-Enríquez, R., Ávila, S., Ramírez, J.L. 2005. Genetic certification of presumed hybrids of blue x red abalone (Haliotis fulgens Philippi and Haliotis rufescens (Swainson) in a commercial farm. AQUACULTURE RESEARCH 36, 1356-1368.
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- Arcos, G.F., Racotta, I.S., Ibarra, A.M. 2004. Genetic parameter estimates for reproductive traits and egg composition in Pacific white shrimp Litopenaeus vannamei. AQUACULTURE 236, 151-165.
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- Maldonado-Amparo, R., Ramírez, J.L., Avila, S., Ibarra, A.M. 2004. Triploid lion-paw scallop (Nodipecten subnodosus Sowerby): growth, gametogenesis, and gametic cell frequencies when grown at a high food availability site. AQUACULTURE 235,185-205.
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- Pérez-Rostro, C.I., Racotta, I.S., Ibarra, A.M. 2004. Decreased genetic variation in metabolic variables of Litopenaeus vannamei shrimp after exposure to acute hypoxia. J. EXPERIMENTAL MARINE BIOLOGY & ECOLOGY 302, 189-200.
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- Cruz, P., Ibarra, A.M., Mejia-Ruiz, H., Gaffney, P.M., Pérez-Enriquez, R. 2004. Genetic variability assessed by microsatellites in a breeding program of Pacific white shrimp Litopenaeus vannamei. MARINE BIOTECHNOLOGY 6, 157-164.
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- Pérez-Rostro, C.I., Ibarra, A.M. 2003. Heritabilities and genetic correlations of size traits at harvest size in sexually dimorphic Pacific white shrimp (Litopenaeus vannamei) grown in two environments. AQUACULTURE RESEARCH 34 (12): 1079-1085.
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- Pérez-Rostro, C.I., Ibarra, A.M. 2003. Quantitative genetic parameter estimates for size and growth rate traits in Pacific white shrimp, Penaeus vannamei (Boone 1931) when reared indoors. AQUACULTURE RESEARCH 34(7): 543-553.
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- Maldonado-Amparo, R., Ibarra, A.M., Ramírez, J.L. 2003. Induction to tetraploidy in catarina scallop, Argopecten ventricosus (Sowerby II, 1842). CIENCIAS MARINAS 29(2): 229-238.
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- Cruz, P., Mejia-Ruiz, C.H., Pérez-Enriquez, R., Ibarra, A.M. 2002. Isolation and characterization of microsatellites in Pacific white shrimp Penaeus (Litopenaeus) vannamei. MOLECULAR ECOLOGY NOTES, 2 (3), 239-241.
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